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On October 28 to 29, 2020, the BMBF-funded joint project [[QPTDat|Quality assurance and linking of research data in plasma technology - QPTDat]] hosts the virtual workshop  
On October 28 to 29, 2020, the BMBF-funded joint project [[QPTDat|Quality assurance and linking of research data in plasma technology - QPTDat]] hosted the virtual workshop  


'''FAIR Research Data in Plasma Medicine'''.
'''FAIR Research Data in Plasma Medicine'''.


The goal of the workshop is to bring together researchers in the field of plasma medicine with research data management experts to discuss requirements and possibilities for research data management in accordance with the [https://www.go-fair.org/fair-principles/ FAIR principles]. Experts will provide an overview over existing procedures and ideas for the provision and usage of quality assured research data, e.g. as a basis for data-driven science. On this basis, approaches for the further development of an ontology, metadata standards, and quality criteria supporting a simplified publication and re-use of data in the field of plasma medicine will be worked out in the course of the workshop.  
The goal of the workshop was to bring together researchers in the field of plasma medicine with research data management experts to discuss requirements and possibilities for research data management in accordance with the [https://www.go-fair.org/fair-principles/ FAIR principles]. Research data management experts provided an overview over existing procedures and ideas for the provision and usage of quality assured research data, e.g. as a basis for data-driven science. On the other side, researchers in the field of plasma medicine and plasma technology introduced different use cases and pointed out specific demands and possible challenges. On this basis, approaches for the further development of an ontology, metadata standards, and quality criteria supporting a simplified publication and re-use of data in the field of plasma medicine were worked out in the course of the workshop.  


The collected ideas will be incorporated into the services to be developed in the framework of QPTDat and thus be made available to the community.
The collected ideas will be incorporated into the services to be developed in the framework of QPTDat and thus be made available to the community.


The workshop language is english.
 
'''Workshop Report:''' [[https://doi.org/10.5281/zenodo.4350287 DOI:10.5281/zenodo.4350287]]
 
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The workshop language is English.


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Workshop participation is free of charge.
Workshop participation is free of charge.
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'''Time schedule (Central European Time (CET)):'''
'''Time Schedule (Central European Time (CET)):'''
{| class="wikitable"
{| class="wikitable"
| colspan="2" |'''October 28, 2020'''
| colspan="2" |'''October 28, 2020'''
|-
|-
|13:15–13:30
|13:15–13:30
|''Welcome and introduction''
|''Welcome and introduction [[https://drive.google.com/file/d/18CdSTKqJObQSOzwI1Ri7MIBLAdSLw5iM/view?usp=sharing Slides]]''
|-
|-
|13:30–14:05
|13:30–14:05
|Methods and data in plasma/bio-medicine
|Ontologies and Knowledge Graphs for FAIR Research Data Management [[https://docs.google.com/presentation/d/1dkLBa7C8AmB3ZqYqEJYVb1THW4JvaUm-7tNr-L4pCXU/edit?usp=sharing Slides]]
''Sander Bekeschus, Leibniz Institute for Plasma Science and Technology, Greifswald''
''Harald Sack, FIZ Karlsruhe – Leibniz Institute for Information Infrastructure, Karlsruhe''
|-
|-
|14:05–14:40
|14:05–14:40
|Research data management within the research department plasmas with complex interactions, especially plasma medicine research groups at the Ruhr-University Bochum
|Methods and data in plasma / bio-medicine [[https://drive.google.com/file/d/1YfltPrNUf-WBXZRMVyRc8McFJXMx_1pi/view?usp=sharing Contact]]
''Marina Prenzel, Ruhr-Universität Bochum''
''Sander Bekeschus, Leibniz Institute for Plasma Science and Technology, Greifswald''
|-
|-
|14:40–15:15
|14:40–15:15
|Tool Pipelining and Data Analysis with KNIME
|Tool Pipelining and Data Analysis with KNIME [[https://drive.google.com/file/d/1QZdivQJMsg7LfpN8KXKx-qN9Djcz4qgA/view?usp=sharing Slides]]
''Nick Plathe, Leibniz Institute for Plasma Science and Technology, Greifswald''
''Nick Plathe, Leibniz Institute for Plasma Science and Technology, Greifswald''
|-
|-
Zeile 45: Zeile 52:
|-
|-
|15:30–16:05
|15:30–16:05
|FAIR principles in biomedicine
|FAIR data management in biomedicine [[https://drive.google.com/file/d/1aa1TBAEOPThJx7L-74v6tBjXeyG-GMWz/view?usp=sharing Slides]] [[https://www.slideshare.net/dagwa/fair-data-management-in-biomedicine-239199472 slideshare]]
 
''Dagmar Waltemath, Medical Informatics, University Medicine Greifswald''
''Dagmar Waltemath, Medical Informatics, University Medicine Greifswald''
|-
|-
|16:05–17:00
|16:05–17:00
|Contributed use cases and discussion
|Contributed use cases and discussion
*Atmospheric Pressure Plasma Effects on Endoglucanase II Enzyme [[https://drive.google.com/file/d/1AtoceHlCRooL7iaA40-a6vlEGnQSZHjm/view?usp=sharing Slides]] <br> ''Zeinab Kabarkouhi, Shahid Beheshti University, Tehran''
*Plasma and nanotechnology for oncotherapy [[https://drive.google.com/file/d/1IBlPW3B7vPj2XOyuMU_4CYmP-vydQe4s/view?usp=sharing Slides]] <br> ''Milad Rasouli, Kharazmi University, Institute for plasma research, Tehran''
*Modelling and modulating the concentration of reactive oxygen and nitrogen species (RONS) in different mixture  at atmospheric  pressure non thermal plasma KINPen/Jets <br> ''Junaid Khan, Comsats University Islamabad''
*Plasma agriculture [[https://drive.google.com/file/d/1hUVNEbJnMAx6ueGtE_ID2NWrjEa7EEGY/view?usp=sharing Slides]] <br> ''Robert Wagner, Leibniz Institute for Plasma Science and Technology, Greifswald''
*FRBRization of knowledge graphs about research data [[https://drive.google.com/file/d/16xC4ZIbppQySJR2kfhU85K8ot5FTgb0Y/view?usp=sharing Slides]] <br> ''Ingo Frank, Leibniz Institute for East and Southeast European Studies, Regensburg''
|-
|-
| colspan="2" |'''October 29, 2020'''
| colspan="2" |'''October 29, 2020'''
|-
|-
|13:15–14:00
|13:15–13:20
|Innovation Platform MaterialDigital and Ontologies and workflows in the material sciences (preliminary title)
|''Introduction [[https://drive.google.com/file/d/13-PPZtmuA3K1wRKBebM5DExxtfkYhh94/view?usp=sharing Slides]]''
''NN, Fraunhofer Institute for Mechanics of Materials IWM, Freiburg''
|-
|-
|14:05–14:25
|13:20–13:50
|Knowledge Graphs for FAIR Research Data (preliminary title)
|Innovation-Platform MaterialDigital: Towards a Deep-rooted Interaction of Ontology and Workflow Tools in Materials Science and Engineering [[https://drive.google.com/file/d/1Hx5lSVRF9Ahf4MmqnwPaqgT5gEOI-vBa/view?usp=sharing Slides]]
''Harald Sack, FIZ Karlsruhe – Leibniz Institute for Information Infrastructure, Karlsruhe''
''Markus Niebel, Fraunhofer Institute for Mechanics of Materials IWM, Freiburg''
|-
|13:50–14:25
|Research data management within the research department plasmas with complex interactions, especially plasma medicine research groups at the Ruhr-University Bochum [[https://drive.google.com/file/d/1DZGK7BakT9sfdYfWFbiag1s2QooVzGNL/view?usp=sharing Slides]]
''Marina Prenzel, Ruhr-Universität Bochum''
|-
|-
|14:30–15:15
|14:25–15:15
|Preview of an ontology and application cases for research data management in plasma medicine and technology
|Preview of an ontology and blockchain use cases for research data management in plasma medicine and plasma technology
''QPTDat project team''
''QPTDat project team''
*Preview of an ontology and blockchain use cases for research data management in plasma medicine and plasma technology [[https://drive.google.com/file/d/1a9MLPTIS8Nxiewcv1CIvdce_56UbqvVt/view?usp=sharing Slides]]<br> ''Tabea Tietz, Fabian Hoppe, Harald Sack, FIZ Karlsruhe – Leibniz Institute for Information Infrastructure, Karlsruhe''
*Use cases to integrate sharing of plasma technology research data with blockchain technology [[https://drive.google.com/file/d/1NqMTQHN62wvZtebnQtQHuNDDS_PplZD0/view?usp=sharing Slides]] <br> ''Simon Tschirner, Hochschule für Angewandte Wissenschaften Hamburg''
*Application of ontology and blockchain for FAIR research data in plasma medicine [[https://drive.google.com/file/d/1pf0ss1RK7O3uPiFmNDICWdAgXnL_m7IG/view?usp=sharing Slides]] <br> ''Laura Vilardell Scholten, Markus Becker, Leibniz Institute for Plasma Science and Technology, Greifswald''
|-
|-
|15:15–15:30
|15:15–15:30

Aktuelle Version vom 18. Dezember 2020, 14:07 Uhr

On October 28 to 29, 2020, the BMBF-funded joint project Quality assurance and linking of research data in plasma technology - QPTDat hosted the virtual workshop

FAIR Research Data in Plasma Medicine.

The goal of the workshop was to bring together researchers in the field of plasma medicine with research data management experts to discuss requirements and possibilities for research data management in accordance with the FAIR principles. Research data management experts provided an overview over existing procedures and ideas for the provision and usage of quality assured research data, e.g. as a basis for data-driven science. On the other side, researchers in the field of plasma medicine and plasma technology introduced different use cases and pointed out specific demands and possible challenges. On this basis, approaches for the further development of an ontology, metadata standards, and quality criteria supporting a simplified publication and re-use of data in the field of plasma medicine were worked out in the course of the workshop.

The collected ideas will be incorporated into the services to be developed in the framework of QPTDat and thus be made available to the community.


Workshop Report: [DOI:10.5281/zenodo.4350287]


QPTDat.pngBMBF gefördert vom deutsch.jpeg

Time Schedule (Central European Time (CET)):

October 28, 2020
13:15–13:30 Welcome and introduction [Slides]
13:30–14:05 Ontologies and Knowledge Graphs for FAIR Research Data Management [Slides]

Harald Sack, FIZ Karlsruhe – Leibniz Institute for Information Infrastructure, Karlsruhe

14:05–14:40 Methods and data in plasma / bio-medicine [Contact]

Sander Bekeschus, Leibniz Institute for Plasma Science and Technology, Greifswald

14:40–15:15 Tool Pipelining and Data Analysis with KNIME [Slides]

Nick Plathe, Leibniz Institute for Plasma Science and Technology, Greifswald

15:15–15:30 Coffee break
15:30–16:05 FAIR data management in biomedicine [Slides] [slideshare]

Dagmar Waltemath, Medical Informatics, University Medicine Greifswald

16:05–17:00 Contributed use cases and discussion
  • Atmospheric Pressure Plasma Effects on Endoglucanase II Enzyme [Slides]
    Zeinab Kabarkouhi, Shahid Beheshti University, Tehran
  • Plasma and nanotechnology for oncotherapy [Slides]
    Milad Rasouli, Kharazmi University, Institute for plasma research, Tehran
  • Modelling and modulating the concentration of reactive oxygen and nitrogen species (RONS) in different mixture  at atmospheric  pressure non thermal plasma KINPen/Jets
    Junaid Khan, Comsats University Islamabad
  • Plasma agriculture [Slides]
    Robert Wagner, Leibniz Institute for Plasma Science and Technology, Greifswald
  • FRBRization of knowledge graphs about research data [Slides]
    Ingo Frank, Leibniz Institute for East and Southeast European Studies, Regensburg
October 29, 2020
13:15–13:20 Introduction [Slides]
13:20–13:50 Innovation-Platform MaterialDigital: Towards a Deep-rooted Interaction of Ontology and Workflow Tools in Materials Science and Engineering [Slides]

Markus Niebel, Fraunhofer Institute for Mechanics of Materials IWM, Freiburg

13:50–14:25 Research data management within the research department plasmas with complex interactions, especially plasma medicine research groups at the Ruhr-University Bochum [Slides]

Marina Prenzel, Ruhr-Universität Bochum

14:25–15:15 Preview of an ontology and blockchain use cases for research data management in plasma medicine and plasma technology

QPTDat project team

  • Preview of an ontology and blockchain use cases for research data management in plasma medicine and plasma technology [Slides]
    Tabea Tietz, Fabian Hoppe, Harald Sack, FIZ Karlsruhe – Leibniz Institute for Information Infrastructure, Karlsruhe
  • Use cases to integrate sharing of plasma technology research data with blockchain technology [Slides]
    Simon Tschirner, Hochschule für Angewandte Wissenschaften Hamburg
  • Application of ontology and blockchain for FAIR research data in plasma medicine [Slides]
    Laura Vilardell Scholten, Markus Becker, Leibniz Institute for Plasma Science and Technology, Greifswald
15:15–15:30 Coffee break
15:30–16:30 Working groups and discussion
16:30–16:45 Summary

Contact:
Leibniz Institute for Plasma Science and Technology (INP)
Markus Becker
Felix-Hausdorff-Str. 2
17489 Greifswald, Germany
Email: markus.becker@inp-greifswald.de
Phone: +49 3834 554 3821


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